Last Posted: Mar 18, 2024
- Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling.
Florence E Buytaers et al. Front Microbiol 2024 3 1330814 - Serovar-level identification of bacterial foodborne pathogens from full-length 16S rRNA gene sequencing.
Dmitry Grinevich et al. mSystems 2024 2 e0075723 - Hundreds of foodborne outbreaks may go undetected in US each year
Feller S. Healio, Jan 29, 2024. - Food Safety: FDA Should Finalize Plans to Implement Its Rule to Help Trace Source of Outbreaks
(report) GAO, Jan 18, 2024. - Whole genome sequencing in the palm of your hand: how to implement a MinION Galaxy-based workflow in a food safety laboratory for rapid Salmonella spp. serotyping, virulence, and antimicrobial resistance gene identification.
Alexandre Lamas et al. Front Microbiol 2023 12 1254692 - CDC warns about Salmonella outbreak linked to recalled dry pet food
Schnirring L. CIDRAP, Nov 10, 2023. - Precision metagenomics sequencing for food safety: hybrid assembly of Shiga toxin-producing Escherichia coli in enriched agricultural water.
Meghan Maguire et al. Front Microbiol 2023 9 1221668 - Predicting Food Sources of Listeria monocytogenes Based on Genomic Profiling Using Random Forest Model.
Weidong Gu et al. Foodborne Pathog Dis 2023 9 - The limit of detection of the BioFire® FilmArray® gastrointestinal panel for the foodborne parasite Cyclospora cayetanensis.
Anna Peterson et al. Diagn Microbiol Infect Dis 2023 8 (2) 116030 - Novel next generation sequencing panel method for the multiple detection and identification of foodborne pathogens in agricultural wastewater.
Dong-Geun Park et al. Front Microbiol 2023 7 1179934 - Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices.
Stéphanie Nouws et al. Front Microbiol 2023 7 1204630 - Outbreaks of Campylobacteriosis Caused by Drinking Raw Milk in Japan: Evidence of Relationship Between Milk and Patients by Using Whole Genome Sequencing.
Yuta Ohno et al. Foodborne Pathog Dis 2023 7 - Challenges Associated with Investigating Salmonella Enteritidis with Low Genomic Diversity in New York State: The Impact of Adjusting Analytical Methods and Correlation with Epidemiological Data.
Deborah J Baker et al. Foodborne Pathog Dis 2023 6 (6) 230-236 - ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data.
Verónica Mixão et al. Genome Med 2023 15(1) 43 - Foodborne Outbreak of Extended Spectrum Beta-lactamase Producing Shigella sonnei Associated with Contaminated Spring Onions in the United Kingdom.
Claire Jenkins et al. J Food Prot 2023 4 (6) 100074 - Genome entropy and network centrality contrast exploration and exploitation in evolution of foodborne pathogens.
Sheryl Le Chang et al. Phys Biol 2023 5 - Whole-Genome Sequencing-Based Characterization of Clinical Listeria monocytogenes Isolates in China, 2013-2019.
Weiwei Li et al. Foodborne Pathog Dis 2023 4 (4) 158-168 - First report of enterotoxigenic Staphylococcus argenteus as a foodborne pathogen.
Marina Cavaiuolo et al. Int J Food Microbiol 2023 3 110182 - An Overview of Foodborne Sample-Initiated Retrospective Outbreak Investigations and Interagency Collaboration in the United States.
Allison Wellman et al. Journal of food protection 2023 4 100089 - An Outbreak Investigation of Vibrio parahaemolyticus Infections in the United States Linked to Crabmeat Imported from Venezuela: 2018.
Sharon L Seelman et al. Foodborne Pathog Dis 2023 4 (4) 123-131
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Disclaimer: Articles listed in the Public Health Genomics and Precision Health Knowledge Base are selected by the CDC Office of Public Health Genomics to provide current awareness of the literature and news. Inclusion in the update does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the update, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.